Aris Paschalidis

Aris Paschalidis

Bioinformatician

Bailey Lab, Brown University

About Me

Aris is a bioinformatician at the Bailey Lab at Brown University. He works on developing software to study the genetics and genomics of infectious disease and immunity. In addition to infectious diseases, he is passionate about medicine and has actively worked on leveraging data analytics to inform local-decision making by physicians and showcasing the effect of more holistic and personalized treatment.

Download my curriculum vitae.

Interests
  • Medicine
  • Health Analytics
  • Artificial Intelligence
Education

  • ScB in Computational Biology, 2021

    Brown University

Projects

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All R Packages Genomics Malaria
COI Around the World
COI Around the World

Complexity of infection (COI) in Plasmodium falciparum around the world using coiaf.
coiaf
coiaf

Complexity of infection estimation with allele frequencies.
MIPTools
MIPTools

A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
miplicorn
miplicorn

A unified framework for molecular inversion probe and amplicon analysis.
CAvaccines
CAvaccines

Analyzing the relationship between vaccination rates and infectious disease incidence in California counties.
UCIData
UCIData

A package for accessing UCI Machine Learning Repository data sets inside Julia.
nof1gen
nof1gen

Analysis of N of 1 clinical trials.

Publications

Aris Paschalidis, Oliver J. Watson, Robert J. Verity, Jeffrey A. Bailey (2021). Complexity of Infection Estimation with Allele Frequencies.

Cite

Christopher M. Melnic, Aris Paschalidis, Akhil Katakam, Hany S. Bedair, Marilyn Heng, Antonia F. Chen, Todd M. O'Brien, Rachel C. Sisodia (2021). Physical Function After Primary Total Knee Arthroplasties (TKAs) Stratified by Pre-operative Patient-Reported Mental Health Score.

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Christopher M. Melnic, Aris Paschalidis, Akhil Katakam, Hany S. Bedair, Marilyn Heng, Antonia F. Chen, Todd M. O'Brien, Rachel C. Sisodia (2021). Patient-Reported Mental Health Score Influences Physical Function After Primary Total Knee Arthroplasty. The Journal of Arthroplasty.

Cite DOI

Taiyao Wang, Aris Paschalidis, Quanying Liu, Yingxia Liu, Ye Yuan, Ioannis Ch Paschalidis (2020). Predictive Models of Mortality for Hospitalized Patients With COVID-19: Retrospective Cohort Study. JMIR Medical Informatics.

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Dimitrios Varrias, Margarida Pujol, Vikramaditya Samala, Megan Zhao, Miguel Ángel Armengol de la Hoz, Aris Paschalidis, Ravi Shah, Michael Silverman, Kevin Heist, Jagmeet Singh, Saumya Das (2020). Predictors Of Continuing Improvement After 1st Month Of Crt Implantation In Women With Heart Failure (Hf).

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Dimitrios Varrias, Aris Paschalidis, Sam Michelhaugh, Avash Das, Ashish Yeri, Aferdita Spahillari, James Januzzi, Ravi Shah, Mike Silverman, Saumya Das (2019). Changes in Plasma Extracellular RNAs: Independent Associations with Left and Right Ventricular Reverse Remodeling.

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Dimitris Bertsimas, Jack Dunn, Aris Paschalidis (2017). Regression and Classification Using Optimal Decision Trees. 2017 IEEE MIT Undergraduate Research Technology Conference (URTC).

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Recent Blogs

Why Use OOP?
R is traditionally a functional programming language, meaning that when we code in R, we tend to think in terms of functions. For instance, given a data set, what function can I create to plot a certain variable?
Last updated on February 21, 2022 Blogs
Why Use OOP?
Using R with Git and Github
A demonstration on how to use R with Git and Github.
Last updated on February 21, 2022 Talks
Using R with Git and Github

Contact

  • 55 Claverick Street, Providence, RI 02903